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University of Alberta
Tool Kit
Protein & Nucleic Acid Search
- BLAST(GenBank/EMBL/SwissProt/PIR)
- BLAST2 at EMBL (GenBank/EMBL/SwissProt/PIR)
- WWW-Query (EMBL/Genbank/NRSub/Hovergen/HIDB)
Nucleic Acid Search
Protein Search
Sequence Analysis
- Genome Navigator - Interactive Genome Viewer
- Genome Navigator - Yeast
- NCBI ORF - Open Reading Frame Finder
- SeqPup - Sequence Editor and Analysis
- TMpred - Prediction of Transmembrane Regions
Database Notification Services
Image Databases
- EMBL Virus Structures
- Image Library of Biologial Macromolecules
- SWISS-3DIMAGE - Annotated 3D Images
Miscellaneous
- ACUTS (Ancient Conserved Untranslated Sequences)
- Androgen Receptor Gene Mutation Database
- Antibody Resource
- Cell Line Database
- COPE (Cytokines Online Pathfinder Encyclopaedia)
- dbCFC - Cytokine Family EST database
- dbEST (Database of Expressed Sequence Tags)
- Database of Genome Sizes (DOGS)
- dbSTS (Database of Sequence Taged Sites)
- DBGET (Integrated Database Retrieval System)
- Enzyme nomenclature Database
- HIC-Up - Hetero-compound structural Database
- IMGT (Immune System Recognition Genome Database)
- Molecular Probe Database
- NLGIP (National Lab for Genetics of Isralei Population)
- Obsolete PDB entries (San Diego Supercomputer Center)
- PROMISE (PROsthetic groups and Metal Ions in protein active SitEs)
Database Sources (downloadable images of sequence databases)
- Human STS - Human Physical Mapping Project, Whitehead Institute
- TREMBL Translated protein sequence database, EBI
Organism-Specific Databases
- Mammalian
- CEPH - Human Genotype Database
- Human cDNA/EST Databse
- Human Chromosome 1 Database
- Insect
-
Yeast
- Saccharomyces Protein Structural Info
- Saccharomyces cerevisiae Genome Database
- Viral
- HIV Sequence Database
- HPVSD - Human Papillomavirus Sequence Database
- Malaria Database - World Health Organization
-
Plant
- TIGR - Arabidopsis thaliana database
Journals Indexes
- Bibliography of Recently Published Biotech articles
- PubMed - NCBI's MEDLINE service
- World-Wide Web Virtual Library of Journals
Other Electronic Publications
Biology/Biochemistry/Molecular Biology Software
- Artemis - DNA sequence viewer and annotation tool (Java)
- BioCatalog -catalog of software for molecular biology and genetics
- Dynafit - statistical analysis of (bio)chemical kinetics and equilibrium binding data
- MODELER - Homoplogy protein structure modeling (UNIX)
- PHYLIP - Phylogeny Inference Package
- PRATT - Find patterns in unaligned protein sequences
- Regress+ - non-line curve fitting, deterministic and stocastic modelling (Macintosh)
- Sequencher - Sequence analysis software
- Seqin - Sequence submission tool
- SeqSearch - Primer Design/Motif Search/Restriction mapping (Windows)
- VacMan - analysis of infectivity data from animal trials (IBM / Macintosh)
- VMD- Visualization and Analysis of Biomolecular Systems (unix)
- WPDB - protein structure database search and display (Windows)
Indexes of BioScience-Related Services
- American Type Culture Collection
- Art's Biotechnology Resource
- BioCrawler
- Genamics
- Scott's Botanical Links
- World-Wide Web Virtual Library
Molecular Biology WWW Servers
- Expasy Molecular Biology Server
- Department of Molecular and Cellular Biology, Harvard University
- Human Genone Project
- RNA World
Cardiovascular Related
- Cardiovascular Institute of the South, (Houma, Louisana)
- Cardiovascular Research Group at SZOTE (Szeged, Hungary)
- The Human Heart: An Online Exploration from the Franklin Institute
Funding Agencies
- Heart & Stroke Foundation of Alberta, NWT & Nunavut
- Natural Sciences and Engineering Research Council of Canada (NSERC)
- Canadian Institutes of Health Research (CIHR)
- Alberta Heritage Foundation for Medical Research (AHFMR)
- Alberta Research Council (ARC)
- National Institutes of Health (NIH)
- National Science Foundation (NSF)
